Revert "root-app: Use directory.recurse for applications"

This reverts commit 356f78cd75.

applications/kustomization.yaml

@@ -0,0 +1,8 @@
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+
+resources:
+  # add-ons
+  - add-ons/traefik.yaml
+  # services
+  - services/app-autoregexbot.yaml

bootstrap/argocd-root-app/root-app.yaml

@@ -8,9 +8,7 @@ spec:
   source:
     repoURL: https://gitea.whyredfire.tech/whyredfire/gitops.git
     targetRevision: main
-    path: applications/
+    path: applications
-    directory:
-      recurse: true
   destination:
     server: https://kubernetes.default.svc
     namespace: argocd